CVE-2026-31973Disclosure(samtools / samtools)

LOWCVSS 7.5 · HIGH

Signal is active with 3 mentions in latest observed window

Immediate actions

  • Track advisory updates for patch or workaround availability

Recommended action window: Monitor and triage in normal cycle

NVD description

SAMtools is a program for reading, manipulating and writing bioinformatics file formats. Starting in version 1.17, in the cram-size command, used to write information about how well CRAM files are compressed, a check to see if the `cram_decode_compression_header()` was missing. If the function returned an error, this could lead to a NULL pointer dereference. Exploiting this bug causes a NULL pointer dereference. Typically this will cause the program to crash. Versions 1.23.1, 1.22.2 and 1.21.1 include fixes for this issue. There is no workaround for this issue.

0.0/ 10 priority

Sources & remediation

Weakness type (CWE)
CWE-476

Priority

LOW

Exploitation

NONE

PoC

NONE

Patch

AVAILABLE

Momentum

NONE

Are you affected?

If you run products in this scope, you should treat this CVE as relevant to your environment.

  • samtools

Threat summary

  • 3 mentions across 1 observed day

What's happening

  • Technical details provided in 1 signal
  • Disclosure: 3 classified signals
  • 3 total mentions across 1 day

Affected systems

Vendors
Products
samtools

1 version affected across 1 product

Deep dive

Activity timeline3 mentions / 1d
01223Mentions · 2026-03-19: 3Technical Details · 2026-03-19: 103-19
Signal classification1 categories
Disclosure
3100.0%
Referenced assets4 URLs
Full discourse3 posts
  • RedPacket Security@RedPacketSec
    Disclosure

    CVE Alert: CVE-2026-31973 - samtools - samtools - https://www.redpacketsecurity.com/cve-alert-cve-2026-31973-samtools-samtools/ #OSINT #ThreatIntel #CyberSecurity #cve-2026-31973 #samtools #

    Post summary

    The post issues a brief CVE alert for CVE‑2026‑31973 affecting samtools, linking to an external alert page, but provides no technical, exploit, or mitigation details.

    0000064
    3.6K followersView on X
  • CVE@CVEnew
    Disclosure

    CVE-2026-31973 SAMtools is a program for reading, manipulating and writing bioinformatics file formats. Starting in version 1.17, in the cram-size command, used to write information… https://www.cve.org/CVERecord?id=CVE-2026-31973

    Post summary

    The post references CVE-2026-31973 as a vulnerability in SAMtools and provides a link to the CVE record, but offers no supporting technical details, PoC, or evidence of exploitation.

    00000146
    56.7K followersView on X
  • Open Source Security mailing list@oss_security
    Disclosure

    CVE-2026-31972: samtools <= 1.21 Use-after-free in mpileup leading to an invalid read https://www.openwall.com/lists/oss-security/2026/03/18/11 CVE-2026-31973: samtools <= 1.23 NULL pointer dereference in cram-size https://www.openwall.com/lists/oss-security/2026/03/18/12 SAMtools is a program for manipulating bioinformatics file formats

    Post summary

    The post delivers a brief disclosure of two new CVEs affecting samtools, describing the technical nature of each flaw without offering PoC, exploit, or remediation details.

    00000233
    4.4K followersView on X
CPE platform detail2 entries

2 of 2 entries

PartVendorProductVersionTarget SWTarget HW
Appsamtoolssamtools---
Appsamtoolssamtools1.23--

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